pwlib (C component)
===================

Documentation for data structrs, constants, and functionsdefined in the C component.

Constants
---------

.. doxygenenum:: alnmode
.. doxygenenum:: std_alntype
.. doxygenenum:: banded_alntype


Functions
---------


.. doxygenfunction:: dptable_init

.. doxygenfunction:: dptable_free

.. doxygenfunction:: dptable_traceback

.. doxygenfunction:: dptable_solve

.. doxygenfunction:: safe_malloc

Data Structures
---------------


.. doxygenstruct:: intpair
.. graphviz:: doxygen/html/structintpair__coll__graph.dot
   :align: center

.. doxygenstruct:: alnscores
.. graphviz:: doxygen/html/structalnscores__coll__graph.dot
   :align: center

.. doxygenstruct:: alnframe
.. graphviz:: doxygen/html/structalnframe__coll__graph.dot
   :align: center

.. doxygenstruct:: std_alnparams
.. graphviz:: doxygen/html/structstd__alnparams__coll__graph.dot
   :align: center

.. doxygenstruct:: banded_alnparams
.. graphviz:: doxygen/html/structbanded__alnparams__coll__graph.dot
   :align: center

.. doxygenstruct:: alnprob
.. graphviz:: doxygen/html/structalnprob__coll__graph.dot
   :align: center

.. doxygenstruct:: alnchoice
.. graphviz:: doxygen/html/structalnchoice__coll__graph.dot
   :align: center

.. doxygenstruct:: dpcell
.. graphviz:: doxygen/html/structdpcell__coll__graph.dot
   :align: center

.. doxygenstruct:: dptable
.. graphviz:: doxygen/html/structdptable__coll__graph.dot
   :align: center

.. doxygenstruct:: alignment
.. graphviz:: doxygen/html/structalignment__coll__graph.dot
   :align: center